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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6122185_6138117_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
6122185 - 6138117
Intron Length:
15933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
GAGCCTCTAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
89
0.88
0.6
84.2
23.6
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
51.1
0.03
1.7
59.83
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014096
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014701
6121935 - 6144147
22213