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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6138217_6140410_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6138217 - 6140410
Intron Length:
2194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAAACAA
U12 Branch Point Sequence:
TCAGCAGCAAAC
Flanking Amino Acid:
SMLLAEAVPEPLEPSAALGM
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.6
32.8
Major BPS
46.7
-0.2
1
51
32.2
Major PPT
92.1
0.95
0.6
87.8
22.1
Minor 5ss
30.6
-2.2
3.4
39.4
46.5
Minor BPS
36.9
-1
2.3
45.84
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014096
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014701
6121935 - 6144147
22213
ENSAPLT00000035397
6130554 - 6144147
13594
ENSAPLT00000031197
6058688 - 6144147
85460