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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6140629_6143378_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6140629 - 6143378
Intron Length:
2750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATTCT
5'SS Class:
strong_major
3'SS Sequence:
TATCCCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTCCCTTTTATC
Flanking Amino Acid:
ATSVDTKGKQRKVVELPKRR
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
28
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
77.5
0.62
0.8
70.5
30.1
Minor 5ss
42.2
-0.9
2.9
59.5
45
Minor BPS
57.8
0.23
1.6
67.57
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014096
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014701
6121935 - 6144147
22213
ENSAPLT00000035397
6130554 - 6144147
13594
ENSAPLT00000031197
6058688 - 6144147
85460