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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6143459_6143770_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6143459 - 6143770
Intron Length:
312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTTAGCAGT
5'SS Class:
major
3'SS Sequence:
TTTCTGCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAC
U12 Branch Point Sequence:
GTAACATTTACT
Flanking Amino Acid:
IGVSRLGNTKGSSVLND*
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.2
64.8
46.6
Major BPS
66.4
0.41
1
59
37.6
Major PPT
83.3
0.75
0.8
76.8
32
Minor 5ss
37
-1.5
2.8
42.5
44.1
Minor BPS
51.3
0.12
2
72.34
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014096
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014701
6121935 - 6144147
22213