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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6143476_6143770_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
6143476 - 6143770
Intron Length:
295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCCAG
5'SS Class:
major
3'SS Sequence:
TTTCTGCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAC
U12 Branch Point Sequence:
GTAACATTTACT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
62.5
43.8
Major BPS
66.4
0.41
1
59
37.6
Major PPT
83.3
0.75
0.8
76.8
32
Minor 5ss
38.9
-1.2
3.1
47.8
42.2
Minor BPS
51.3
0.12
2
72.34
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014096
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031197
6058688 - 6144147
85460
ENSAPLT00000035397
6130554 - 6144147
13594