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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6150158_6151078_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6150158 - 6151078
Intron Length:
921

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTTAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TGTGTTTTAACA
Flanking Amino Acid:
LAKKFEELEQLEKLKDQLSA
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.5
26.8
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
77.6
0.62
1
73.3
40.9
Minor 5ss
24.3
-3
3.1
28.7
43.6
Minor BPS
69.8
0.62
1.3
75.16
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014170
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026891
6149831 - 6154149
4319