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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6151117_6153598_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6151117 - 6153598
Intron Length:
2482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
AATGCCAGTACT
Flanking Amino Acid:
KLAWRRPENIDWELAKKFEE
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
78
31.9
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
84.9
0.78
0.7
79.8
25.6
Minor 5ss
32.5
-2
3.2
40.8
45.4
Minor BPS
45
-0.3
2.1
65.72
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014170
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026891
6149831 - 6154149
4319