About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6179181_6180466_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6179181 - 6180466
Intron Length:
1286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TGTTTATTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
CTATGTTTATTT
Flanking Amino Acid:
TLAHNLQEQEIEHHLATNIQ
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
75.1
35.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
86
0.81
0.8
77.7
40.6
Minor 5ss
37.3
-1.4
2.7
42.3
38.4
Minor BPS
49
0
2
67.81
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014200
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039315
6172380 - 6199768
27389
ENSAPLT00000037868
6164767 - 6199768
35002
ENSAPLT00000029415
6164767 - 6199768
35002
ENSAPLT00000014842
6164767 - 6201505
36739