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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6194946_6195474_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6194946 - 6195474
Intron Length:
529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAA
U12 Branch Point Sequence:
CTGTCTGTATTT
Flanking Amino Acid:
QKAAQVAQDEEIARLLMAEE
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74
38.4
Major BPS
57
0.17
0.9
65
30.8
Major PPT
91.3
0.93
0.6
89.3
19.5
Minor 5ss
33.3
-1.9
2.8
38.7
46.6
Minor BPS
47
-0.1
2.2
66.59
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014200
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029415
6164767 - 6199768
35002
ENSAPLT00000014842
6164767 - 6201505
36739
ENSAPLT00000039315
6172380 - 6199768
27389
ENSAPLT00000037868
6164767 - 6199768
35002