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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6197758_6198748_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6197758 - 6198748
Intron Length:
991

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
GTCCTTACAGCC
Flanking Amino Acid:
QFSKPEHSPKGSRRKQ*
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
74.4
36
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
89
0.88
0.7
81
36.6
Minor 5ss
32.4
-2
3.1
40.9
45.1
Minor BPS
38.9
-0.8
1.7
45.34
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014200
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039315
6172380 - 6199768
27389
ENSAPLT00000037868
6164767 - 6199768
35002
ENSAPLT00000029415
6164767 - 6199768
35002