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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6254010_6254081_F

Intron Information:

Intron Rank:
147838
Intron Class:
major
Intron Phase:
Intron Coordinates:
6254010 - 6254081
Intron Length:
72

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGATA
5'SS Class:
strong_major
3'SS Sequence:
TCGTGCTGTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TATGATTCTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
0.9
76.6
33.7
Major BPS
84.6
0.86
1
74
41.2
Major PPT
70.7
0.47
1
64.3
41.6
Minor 5ss
30.5
-2.2
3.2
36.4
42
Minor BPS
45
-0.3
2.1
66.11
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029567
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033916
6252972 - 6260665
7694