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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6254138_6282732_F

Intron Information:

Intron Rank:
147837
Intron Class:
major
Intron Phase:
Intron Coordinates:
6254138 - 6282732
Intron Length:
28595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCGTCTTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCTAT
U12 Branch Point Sequence:
TTCGTCTTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
61.2
0.28
1.4
60.7
45.4
Major PPT
74.7
0.56
1
74.8
34
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
60.5
0.19
1.6
63.72
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029567
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021186
6254082 - 6283667
29586