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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6273824_6277943_R

Intron Information:

Intron Rank:
136293
Intron Class:
major
Intron Phase:
Intron Coordinates:
6273824 - 6277943
Intron Length:
4120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAA
U12 Branch Point Sequence:
CTATCCACAGTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
70.6
0.51
1
73.3
31.3
Major PPT
76.2
0.59
1
75.5
33.3
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
46.2
-0.2
2
66.27
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020743
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043450
6269869 - 6278308
8440