Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6303614_6332559_F

Intron Information:

Intron Rank:

137658

Intron Class:

major

Intron Phase:

Intron Coordinates:

6303614 - 6332559

Intron Length:

28946

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTGAGTAGC

5'SS Class:

strong_major

3'SS Sequence:

TTCTGCCTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTCCAC

U12 Branch Point Sequence:

CTTTCCACAAAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

0.9

36.6

Major BPS

67.4

0.43

1.3

78.4

35.2

Major PPT

84.1

0.77

0.8

Minor 5ss

30.8

-2.2

2.6

33.6

35.6

Minor BPS

55.4

0.25

78.91

42.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024131

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031022

6303446 - 6348713

45268