Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6330982_6332559_F

Intron Information:

Intron Rank:

137656

Intron Class:

major

Intron Phase:

Intron Coordinates:

6330982 - 6332559

Intron Length:

1578

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAAGTTT

5'SS Class:

major

3'SS Sequence:

TTCTGCCTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTCCAC

U12 Branch Point Sequence:

CTTTCCACAAAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.2

0.69

0.9

32.3

Major BPS

67.4

0.43

1.3

78.4

35.2

Major PPT

84.1

0.77

0.8

Minor 5ss

36.6

-1.5

3.6

49.2

Minor BPS

55.4

0.25

78.91

42.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024131

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025818

6330844 - 6338537

7694