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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6332714_6338192_F

Intron Information:

Intron Rank:
137660
Intron Class:
major
Intron Phase:
Intron Coordinates:
6332714 - 6338192
Intron Length:
5479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TCTGTACTGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
70.5
41.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
66.4
0.37
1
62.7
38.7
Minor 5ss
32.5
-2
3
38.1
40.9
Minor BPS
65.8
0.57
1.6
83.94
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024131
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035320
6332148 - 6338302
6155