Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6348853_6356612_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6348853 - 6356612

Intron Length:

7760

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGGAAC

5'SS Class:

strong_major

3'SS Sequence:

TTTCTGTTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTAAC

U12 Branch Point Sequence:

AGGCTGTTAACG

Flanking Amino Acid:

SSHFVPKPIEVCMYREPSLH

Intron Amino Acid Position:

168

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

0.9

74.8

35.2

Major BPS

74.5

0.61

1.1

75.6

36.6

Major PPT

89.1

0.88

0.7

84.2

30.7

Minor 5ss

38.6

-1.3

3.1

50.7

46.2

Minor BPS

47.3

-0.3

2.1

51.51

42.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014483

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039646

6348734 - 6441268

92535

ENSAPLT00000015108

6348734 - 6476390

127657