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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6356812_6416055_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6356812 - 6416055
Intron Length:
59244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
TCTCTCGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTCTTCTCT
Flanking Amino Acid:
MNAEGYLYSSDVFTPECKFK
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
69
35.7
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
79
0.65
0.8
73.1
31.8
Minor 5ss
33.7
-1.9
2.7
43.9
37
Minor BPS
47.7
-0
3.6
87.15
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014483
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039646
6348734 - 6441268
92535
ENSAPLT00000015108
6348734 - 6476390
127657