Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_635765_636261_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

635765 - 636261

Intron Length:

497

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAATGGA

5'SS Class:

strong_major

3'SS Sequence:

TTTCCTTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTATTTTTAATG

Flanking Amino Acid:

HPSSLRKHMKVHESSSQGSQ

Intron Amino Acid Position:

381

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

0.9

74.8

35.6

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

92.2

0.95

0.6

88.1

21.7

Minor 5ss

31.4

-2.1

3.2

40.8

45.4

Minor BPS

72.1

0.56

1.2

71.31

36.2

Associated Gene:

Gene:

ZIC1

Ensembl Gene ID:

ENSAPLG00000002960

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002991

635211 - 638693

3483