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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6422050_6476302_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6422050 - 6476302
Intron Length:
54253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGAGC
5'SS Class:
major
3'SS Sequence:
ATTTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TAATTATTATTT
Flanking Amino Acid:
GRRLRSSNSPEPQLKGIVTR
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
63.9
42.4
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
90.2
0.9
0.7
85.3
28.7
Minor 5ss
25.8
-2.8
3.2
33.4
42.1
Minor BPS
51.6
0.13
1.8
70.92
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014483
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015108
6348734 - 6476390
127657