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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_650403_650510_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
650403 - 650510
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGACT
5'SS Class:
strong_major
3'SS Sequence:
GTCTCAACAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTGTCTCAACA
Flanking Amino Acid:
ISHTAQRLAAGSYPGHHGHH
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
76.1
39.5
Major BPS
85
0.87
0.8
85.6
23
Major PPT
62.7
0.29
1
56.2
37.8
Minor 5ss
33.5
-1.9
3.5
49
47
Minor BPS
67.6
0.55
1.6
79.1
37.4

Associated Gene:

Gene:
ZIC4
Ensembl Gene ID:
ENSAPLG00000003027
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003064
645132 - 660486
15355