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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6584335_6636378_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6584335 - 6636378
Intron Length:
52044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGGCAG
5'SS Class:
major
3'SS Sequence:
CTCTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TCTCACGGAAGG
Flanking Amino Acid:
TAKDFIFSMLGMVQKLDQKL
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.2
51.4
47
Major BPS
85
0.87
0.8
85.6
23
Major PPT
88
0.86
0.7
83.5
24.7
Minor 5ss
28.3
-2.5
3.4
29.1
43.5
Minor BPS
38.6
-1
2.3
46.51
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014603
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015213
6582892 - 6636589
53698