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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6694649_6695675_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6694649 - 6695675
Intron Length:
1027

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
ATTGACTCACCT
Flanking Amino Acid:
IVVRRNKETYVDGFQVSLPV
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
87.3
27
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
85.8
0.81
0.7
85.6
29.2
Minor 5ss
41.1
-1
3.4
62.8
42
Minor BPS
47.8
-0
2.1
71.68
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014283
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014880
6693978 - 6721505
27528