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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6707910_6708393_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6707910 - 6708393
Intron Length:
484

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTGAGTGTT
5'SS Class:
major
3'SS Sequence:
CTTTTGTCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
GCGATCTTATTT
Flanking Amino Acid:
CIEWRNTTLCPMSCPGGSIY
Intron Amino Acid Position:
646

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.3
72.6
38.9
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
82.7
0.74
0.8
81.3
30.8
Minor 5ss
35
-1.7
3.4
53.7
43.8
Minor BPS
49.2
0.02
1.6
60.47
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014283
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014880
6693978 - 6721505
27528