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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6712326_6713392_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6712326 - 6713392
Intron Length:
1067

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTC|GTAAGTGCA
5'SS Class:
major
3'SS Sequence:
TTCACCCACACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTCCTTTCACC
Flanking Amino Acid:
TIMWRNNTFCPLPCPTHSHY
Intron Amino Acid Position:
967

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.3
67.7
37.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
68
0.41
0.9
61.6
33.8
Minor 5ss
34.5
-1.8
3.1
42.2
38.9
Minor BPS
67.8
0.54
1.7
79.59
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014283
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014880
6693978 - 6721505
27528