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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6714199_6715427_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6714199 - 6715427
Intron Length:
1229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAA
U12 Branch Point Sequence:
GATAATGAAACT
Flanking Amino Acid:
KSGKYKCNPTGFGTCRIMGD
Intron Amino Acid Position:
1075

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
76.8
31.8
Major BPS
67.7
0.44
1
58
38.9
Major PPT
83.2
0.75
0.6
81.8
23.1
Minor 5ss
39.1
-1.2
3
50.2
46.2
Minor BPS
40.9
-0.6
2.3
59.49
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014283
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014880
6693978 - 6721505
27528