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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6716333_6717385_F

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
6716333 - 6717385
Intron Length:
1053

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
AAGGACAAAGTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
CTAGATTTAAAG
Flanking Amino Acid:
YVSFDGNQNAEGLCGDFDGT
Intron Amino Acid Position:
1208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
25.6
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
45.7
-0.2
1
31.7
35
Minor 5ss
35.3
-1.7
3.2
50.4
46
Minor BPS
47.1
-0.3
1.8
50.07
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014283
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014880
6693978 - 6721505
27528