Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6718947_6720260_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

6718947 - 6720260

Intron Length:

1314

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTAAGTGTC

5'SS Class:

strong_major

3'SS Sequence:

TTGCAAACAGGAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

TGGGCATGAACG

Flanking Amino Acid:

HSEVSPDFYYICIFDMCVDR

Intron Amino Acid Position:

1295

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.82

81.7

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

45.2

-0.2

1.7

45.9

40.1

Minor 5ss

39.7

-1.2

3.4

57.1

40.8

Minor BPS

47.8

-0.3

1.9

54.43

45.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014283

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014880

6693978 - 6721505

27528