Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6720389_6721116_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6720389 - 6721116

Intron Length:

728

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGCACA

5'SS Class:

strong_major

3'SS Sequence:

CTTATTCTCACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATAAC

U12 Branch Point Sequence:

CTCTCCTTATTC

Flanking Amino Acid:

MEGWRQETACEMPCPANSKY

Intron Amino Acid Position:

1338

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.5

0.77

73.3

37.4

Major BPS

77.9

0.69

78.3

31.3

Major PPT

81.6

0.71

0.8

32.5

Minor 5ss

39.8

-1.1

2.8

42.5

Minor BPS

64.6

0.44

1.6

69.6

42.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014283

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014880

6693978 - 6721505

27528