About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6727049_6727520_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6727049 - 6727520
Intron Length:
472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGGCTG
5'SS Class:
major
3'SS Sequence:
CTGCCTCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCCCAT
U12 Branch Point Sequence:
CCTGGCTCACCC
Flanking Amino Acid:
DGYIINVAPVDEGPPATLGS
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
64.7
46.6
Major BPS
50.9
0.02
1.3
60.4
37.5
Major PPT
70.6
0.46
0.8
61.7
34.9
Minor 5ss
34.8
-1.7
3.4
48.4
47.2
Minor BPS
41.3
-0.6
2.2
49.56
47.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014414
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015017
6726747 - 6729268
2522