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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6735907_6736500_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6735907 - 6736500
Intron Length:
594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCAGC
5'SS Class:
major
3'SS Sequence:
TGTTTCTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
CTGACCACAAAC
Flanking Amino Acid:
VVITLLVCLTMSLTEAYPKL
Intron Amino Acid Position:
912

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
69.9
41.1
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
85.8
0.81
0.8
77.8
36.7
Minor 5ss
41.4
-1
2.9
52.4
38.7
Minor BPS
44.5
-0.4
1.9
53.95
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003275
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003363
6731646 - 6761613
29968