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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6738731_6738995_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6738731 - 6738995
Intron Length:
265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTCCTCCAACA
Flanking Amino Acid:
SSLVEELQKLNYYVGMCGDG
Intron Amino Acid Position:
816

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
76.7
33.2
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
78.3
0.64
0.8
74.2
29.5
Minor 5ss
43
-0.8
3.3
59.1
40
Minor BPS
55.4
0.17
1.9
74.2
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003275
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003363
6731646 - 6761613
29968