Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6739076_6739844_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6739076 - 6739844

Intron Length:

769

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTTCA

5'SS Class:

strong_major

3'SS Sequence:

CTCTGTCCTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCATGAA

U12 Branch Point Sequence:

CCCACCTGAGAC

Flanking Amino Acid:

VKHFYSLLPKILVNATVFAR

Intron Amino Acid Position:

790

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.9

80.5

27.6

Major BPS

48.1

-0.1

1.3

39.7

40.4

Major PPT

79.2

0.66

0.8

31.9

Minor 5ss

42.2

-0.9

2.7

50.9

39.6

Minor BPS

42.9

-0.5

1.8

45.07

42.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003275

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003363

6731646 - 6761613

29968