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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6745684_6745743_R

Intron Information:

Intron Rank:
14
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
6745684 - 6745743
Intron Length:
60

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGACTCGT
5'SS Class:
weak_major
3'SS Sequence:
GCCAAGCTCCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCCAAA
U12 Branch Point Sequence:
CAAAGCACAGCC
Flanking Amino Acid:
LKMFEGTHWVTHVCRGNPFS
Intron Amino Acid Position:
560

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.9
0.23
1.4
59.7
46.7
Major BPS
50.3
0.01
1.2
60.3
34.2
Major PPT
48.5
-0
1.1
40.4
38.1
Minor 5ss
37.4
-1.4
3
48.9
40.7
Minor BPS
34.4
-1.2
2
38.81
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003275
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003363
6731646 - 6761613
29968