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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6748411_6748654_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6748411 - 6748654
Intron Length:
244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGCAC
5'SS Class:
major
3'SS Sequence:
TATCTCATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTTATCTCATTT
Flanking Amino Acid:
GQINLVCFDKTGTLTEDGLD
Intron Amino Acid Position:
488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
66.8
38.9
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
77.4
0.62
0.8
75
34.2
Minor 5ss
32.8
-2
3.3
42.1
39
Minor BPS
53.6
0.19
1.8
76.54
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003275
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003363
6731646 - 6761613
29968