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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6748841_6749073_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6748841 - 6749073
Intron Length:
233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTGCTTGCAGAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACCTCAC
U12 Branch Point Sequence:
CCCACCTCACCG
Flanking Amino Acid:
YTVCVFTYHQPVAEVVAMAL
Intron Amino Acid Position:
426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
63.6
0.34
1
65.3
32.1
Major PPT
55.2
0.12
1.1
57
37.7
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
44.2
-0.5
1.9
43.64
47.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003275
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003363
6731646 - 6761613
29968