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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6749232_6749454_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6749232 - 6749454
Intron Length:
223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTCCT
5'SS Class:
major
3'SS Sequence:
TGTCTTCACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
CGTGTCTTCACG
Flanking Amino Acid:
RPVRAVVLQTGFNTAKGDLV
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
69.8
40.4
Major BPS
77.5
0.68
1
79.6
33
Major PPT
74.5
0.55
0.9
69.9
35.6
Minor 5ss
43.1
-0.8
2.8
56.7
41.7
Minor BPS
48.9
-0.2
2
54.89
46.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003275
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003363
6731646 - 6761613
29968