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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6753708_6755493_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6753708 - 6755493
Intron Length:
1786

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTATGTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
CATCCCCTGACA
Flanking Amino Acid:
RPIWKLLFKEILNPFYVFQA
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1.2
77.9
38.6
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
86.2
0.81
0.8
80.7
36.7
Minor 5ss
30.5
-2.2
2.5
33.4
41.8
Minor BPS
56
0.18
1.7
66.06
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003275
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003363
6731646 - 6761613
29968