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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6755564_6756115_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6755564 - 6756115
Intron Length:
552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTCT
5'SS Class:
major
3'SS Sequence:
TCCCTTCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTACGAT
U12 Branch Point Sequence:
ATGTGGGGAACT
Flanking Amino Acid:
AGLTREDQKIRQLVCGPNAI
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.52
1.1
66.6
39.6
Major BPS
49.8
-0
1.4
50.2
43.7
Major PPT
81.7
0.71
0.7
75.8
26.4
Minor 5ss
37.7
-1.4
3.6
56.7
47.5
Minor BPS
38.5
-0.8
2.8
62.7
47.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003275
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003363
6731646 - 6761613
29968