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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6756695_6757656_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6756695 - 6757656
Intron Length:
962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTATGTTCA
5'SS Class:
weak_major
3'SS Sequence:
TCTATTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAG
U12 Branch Point Sequence:
TTGTCAGTAAAC
Flanking Amino Acid:
EADIVLLRTTDEFQRYTRKK
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.2
0.29
1.3
61.6
39.7
Major BPS
60.9
0.27
1.7
71.4
45.1
Major PPT
80.7
0.69
0.8
73.7
36.8
Minor 5ss
48.4
-0.1
2.3
63.3
41.4
Minor BPS
49
-0.1
2.3
68.86
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003275
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003363
6731646 - 6761613
29968