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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6757831_6761550_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6757831 - 6761550
Intron Length:
3720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCTGTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAA
U12 Branch Point Sequence:
AGCTTGTTAACA
Flanking Amino Acid:
LLNKDEENELEIFGYKTQGY
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
77.9
36.3
Major BPS
72.1
0.55
1.2
63.7
43.9
Major PPT
77.9
0.63
0.9
72
38
Minor 5ss
35
-1.7
3.2
47
42.5
Minor BPS
55.2
0.16
2.1
65.76
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003275
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003363
6731646 - 6761613
29968