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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6774568_6775005_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6774568 - 6775005
Intron Length:
438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGATCAT
U12 Branch Point Sequence:
CATTCGCTAACC
Flanking Amino Acid:
QPWYSRTDIHSACLSVDSHM
Intron Amino Acid Position:
968

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
70.6
37.9
Major BPS
64.2
0.35
1.2
65.8
41
Major PPT
88.2
0.86
0.7
83.2
32
Minor 5ss
34.1
-1.8
3.1
44.9
43.1
Minor BPS
50
-0
2.4
68.24
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003633
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003802
6770667 - 6812744
42078