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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6776636_6777872_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6776636 - 6777872
Intron Length:
1237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
TATCCGCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTAAT
U12 Branch Point Sequence:
TTGCCCTTTATT
Flanking Amino Acid:
PSIACVPELIREGRAALVTS
Intron Amino Acid Position:
853

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.8
38.5
Major BPS
73.1
0.57
1
71.9
31.3
Major PPT
65
0.34
1
57.9
37.3
Minor 5ss
43
-0.8
2.9
56.9
47.4
Minor BPS
66.9
0.61
1.6
81.55
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003633
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003802
6770667 - 6812744
42078