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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6777983_6778783_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6777983 - 6778783
Intron Length:
801

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
TGGCTTGTAAGT
Flanking Amino Acid:
MCGDGANDCGALKVAHAGIS
Intron Amino Acid Position:
817

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
77.6
32.8
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
80.4
0.68
0.8
76.7
32
Minor 5ss
31.6
-2.1
3.1
31.7
42.6
Minor BPS
44
-0.3
2.2
60.9
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003633
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003802
6770667 - 6812744
42078