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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6778827_6779185_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6778827 - 6779185
Intron Length:
359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
TTTATTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
GTCTCTTTATTT
Flanking Amino Acid:
SSLVEEFQKLDYFVGMCGDG
Intron Amino Acid Position:
802

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
75.2
35.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
89.3
0.88
0.7
89
27.8
Minor 5ss
44.1
-0.6
2.8
56.3
41.9
Minor BPS
63.5
0.5
1.6
76.04
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003633
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003802
6770667 - 6812744
42078