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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6784765_6785628_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6784765 - 6785628
Intron Length:
864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGCTAT
5'SS Class:
major
3'SS Sequence:
GCTTTTCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
AATATCTAATCT
Flanking Amino Acid:
VVRPGPKASSASVEGVIILH
Intron Amino Acid Position:
550

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.1
67.9
39.9
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
76.6
0.6
0.8
69.5
36.8
Minor 5ss
47.5
-0.2
2.9
65.3
45.9
Minor BPS
48.4
-0
1.9
67.91
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003633
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003802
6770667 - 6812744
42078