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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6795059_6795486_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6795059 - 6795486
Intron Length:
428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTCAGTCAA
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
AATTCATTAATG
Flanking Amino Acid:
GVAKAVVLRTGFNTAKGDLV
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.3
66.8
40.3
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
96.2
1.04
0.5
92.4
17.6
Minor 5ss
29.1
-2.4
2.7
29.9
36.5
Minor BPS
66.2
0.37
1.6
68.61
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003633
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003802
6770667 - 6812744
42078