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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6798324_6799115_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6798324 - 6799115
Intron Length:
792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTCAACAT
5'SS Class:
weak_major
3'SS Sequence:
CCTCTCCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TAACTCTTGAGT
Flanking Amino Acid:
IPIWKLLIKEVLNPFYVFQL
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.7
0.23
1.2
57.2
41.6
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
67
0.38
0.9
62.2
32.3
Minor 5ss
28.3
-2.5
3.2
39.7
45.7
Minor BPS
54.9
0.24
1.6
69.86
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003633
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003802
6770667 - 6812744
42078