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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6800298_6802101_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6800298 - 6802101
Intron Length:
1804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAA
U12 Branch Point Sequence:
CTTGCTTTATTT
Flanking Amino Acid:
NEALMKPSLQVKSIQVQKIR
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
77
33.6
Major BPS
73
0.57
1.2
77.7
37.1
Major PPT
89.2
0.88
0.7
84.2
30.3
Minor 5ss
35.2
-1.7
2.9
41.4
39.1
Minor BPS
58.7
0.35
1.7
74.81
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003633
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003802
6770667 - 6812744
42078