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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_68064_72212_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68064 - 72212
Intron Length:
4149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTGT
5'SS Class:
strong_major
3'SS Sequence:
CCTTATTAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATTATTTAAAA
Flanking Amino Acid:
SYEKYNTWEQIAAWTEDITA
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.8
39.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
69.9
0.45
1
65.7
38.6
Minor 5ss
37.8
-1.4
3.5
55.9
48.3
Minor BPS
65.7
0.49
1.6
75.12
35.5

Associated Gene:

Gene:
CPB1
Ensembl Gene ID:
ENSAPLG00000014834
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022744
54238 - 80561
26324
ENSAPLT00000015506
54238 - 76917
22680
ENSAPLT00000038325
54238 - 128396
74159